PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027629.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family M-type_MADS
Protein Properties Length: 1523aa    MW: 166541 Da    PI: 4.5399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027629.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14e-17177215341
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
       SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 
                  i n+s r  tf kRr+g++KKA+EL +LCd++ +v++++
  Aco027629.1 177 IANDSTRRATFKKRRKGLMKKASELATLCDVRTCVVVYG 215
                  89***********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.082167215IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-19167226IPR002100Transcription factor, MADS-box
CDDcd002668.56E-31168251No hitNo description
PRINTSPR004043.2E-7169189IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-22169260IPR002100Transcription factor, MADS-box
PfamPF003198.1E-17177215IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-7189204IPR002100Transcription factor, MADS-box
PfamPF048258.6E-19430489IPR006910Rad21/Rec8-like protein, N-terminal
SuperFamilySSF467851.33E-1314461518IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.5804.0E-2014461519IPR023093Rad21/Rec8-like protein, C-terminal
PfamPF048242.1E-1714671516IPR006909Rad21/Rec8-like protein, C-terminal, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000228Cellular Componentnuclear chromosome
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1523 aa     Download sequence    Send to blast
FLVPVQGLAD SQTRGCAVLV PVQGSLFRYK AWQPQTQELQ SAVFTSFRLY FAPIDAHTRA  60
YELVSKYPCH VWAYKKRAQH NPPATPLSTR TSSLAFSVSH SLSRSRLTCK TPPHQLPPCV  120
PGPTNLSAPF LGFRFLIFVL LSASCTIAAS VTFGKRQATA EGTYTLMARK KVSLAWIAND  180
STRRATFKKR RKGLMKKASE LATLCDVRTC VVVYGLGEAQ GKVWPSPAEA ARVLARFKSM  240
PEMEQCKKMM NQEGFLRQRV AKAQEQLRKQ ERENRELETT LLMYDGLNSV AEGVGAVGRL  300
RDLAIEDATS LAWMVEMKAK AVQERIDILK AQMHHTASAA ATAAASSSHA AAVIQQHQGP  360
ADALVAKDKT PLEAAMEALQ RQNWFMEVMN PSIDNNVLFG SVSAQAEEMM LMQPYIDTTM  420
PISLDCSRQN SILFPEVPIA LRLSSHLLLG VVRIYSRKVN YLFHDCSEAL LKIKQAFRST  480
AVDLPPEEST APYHSITLPE TFHLDDFELP DAALQGDFVD HHISTKEQIT LQDNLEKTGY  540
STSLFGLDER FGDGNASQIG LDLDEDLFLD KDKSSQHPSI ELGFDDGIFH QGQSSHPSTD  600
MVIDENLRIT ENRSNLSELT YDKSNSSHLE DLRRNNDAST WHGYNIQTPD LNEAFFPNNH  660
EEGPPMEDIR SPDLLECAHA PSTPGLMEET MPANIQGSPV LSPQQGKASS PSVNDDALKA  720
DSLVNSANDN VANPNAVIMD PEQVNNATAT CNEGTDHLND NGETKHSEIT SVDGLSNLET  780
SIAKSMVDAE VVNSPSTVPN NLPESGSMAG TIEKSQPSTN QGHMEEDGTL LPANATEFGS  840
GLSLKSCTAG KDKASFVENV ALVENASEFG NKEPEEGSST VNPLHISEDA CITNATGTTI  900
VGALQNSEHL EPSDLLSNEK SIEQSNSELP EPEKMLEAPS IDVNQTNELG QVTVEKGVTE  960
SDGSANRVSS LTGKKRRLVD STPALENEST GKIARKPRAG KSMDYIPDDD DLLASILVGK  1020
KTPGLRLGPS PPPPKTGPQK RLWLTPRTGM PKRKVLVDDA MVLHADAIRQ QLLNTEDIRH  1080
IRKKAPCTRP DIWMIEKSWF EDEIFHESIF SGASAELNTL QLRTYDIVTR GRSSQAELSK  1140
EPEVSDIVRT SNEDQPCAAP TTEITDQEAN AGSRTDDATN HSEAMLADKA NDIGMSEQQL  1200
SNELNPPSVD QSEMNDKPLH LLENSSPKDI IFTEDDGRGT ISNEGASMSV MDTVNFPQDV  1260
CANLDNNVNG EASLTVESSG FPVADVSLPS DSANVMRDAI SSPNVVVEEA VEEMKDELGN  1320
KLHDENAADE VFDSKENLGE KMLGEDALAD TGLPLQPTIE DENVTSAVGE NSGLQENNLK  1380
GGMDVESTGT NFGPKEYGDF CSGIDGVGTE FLNVDDEGDY DEEANDDLPN PEELHSFENS  1440
GCSSCTRGVA RYLKTLFDEE AGRGRKSVAM DHLLSGKTRE EASRMFFETL VLKTRDYIHV  1500
EQEHPFELIN IKPRINLMKA KF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168190RKKVSLAWIANDSTRRATFKKRR
2187191KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6666977e-60KM666697.1 Ananas bracteatus clone 52056 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088034.10.0sister chromatid cohesion 1 protein 4 isoform X1
RefseqXP_020088042.10.0sister chromatid cohesion 1 protein 4 isoform X1
TrEMBLA0A199V9Z60.0A0A199V9Z6_ANACO; Sister chromatid cohesion 1 protein 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-33AGAMOUS-like 80