PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 371aa    MW: 39619.5 Da    PI: 8.3019
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027352.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.5e-34461372102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y+++++++++ +i w +++nsfvv+d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll++i 
   Aco027352.1  46 FVVKTYRMVNEPSTDAVIAWGKENNSFVVVDPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLRQIA 133
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
   Aco027352.1 134 RRNS 137
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-5242135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3343135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3743135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-174669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2946135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-178496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1797109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
DTTISMMTMM MEEDGSKNKN KNNNDHMMMI RGYRGGGGGA LAAAPFVVKT YRMVNEPSTD  60
AVIAWGKENN SFVVVDPFVF SQTLLPAHFK HNNFSSFVRQ LNTYGFRKVD PDRWEFAHAS  120
FLRGQTHLLR QIARRNSGGG GGGGGSNSSS SACCSSSSSS SSTTTSTGWG VNGKKKKKMM  180
MTTTMEEGDE AAVAEEVVRL KQEQKAIEER VARMWRRVQE TERRPRQMLE FLFKLVGDPQ  240
LLPRLIVGPG PTPPPPPPPA AAPATATAAV PECGGGGGGE KRARRLRELE ADREARPGVA  300
GLCSWPLDSE GAAAGGFYDR RGEDELISAV DQPVGFLYGG DGGDYGGVVD GGGSSGGGFY  360
PYAFPVGNGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-244613510110Heat shock factor protein 1
5hdn_A2e-244613510110Heat shock factor protein 1
5hdn_B2e-244613510110Heat shock factor protein 1
5hdn_C2e-244613510110Heat shock factor protein 1
5hdn_D2e-244613510110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178GKKKKKM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485383e-83AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence.
GenBankAK3544353e-83AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06.
GenBankAK3581363e-83AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14.
GenBankAK3703993e-83AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13.
GenBankHM4460413e-83HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087693.10.0heat stress transcription factor C-2b-like
SwissprotQ6EUG45e-80HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A199W3V91e-135A0A199W3V9_ANACO; Heat stress transcription factor C-2a
STRINGGRMZM2G105348_P011e-82(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-57heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]