PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 382aa    MW: 41831.5 Da    PI: 8.5152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026471.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.47.3e-08221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ Cgk F+r  nL+ H+r H
  Aco026471.1 221 YYCQVCGKGFKRDANLRMHMRAH 243
                  89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.6E-6220247No hitNo description
PROSITE profilePS5015713.443221248IPR007087Zinc finger, C2H2
SMARTSM003559.0E-4221243IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-7221247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM0035548277310IPR015880Zinc finger, C2H2-like
SMARTSM0035534315337IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMNNQQGYQA YQGIEDMLSL PTGPAAATAS CAVDAPLSYS LLYNVSALCE KIQQLESYVG  60
IIISPSRMQQ ESVGVAVSDA GSLAKEIIVS TSSIMYALQQ IGLETVSAPT DELLARQAKT  120
SYEDSSEALD HAVRSNNLDG GRSIVFSDAD VHYSCNPSNT TSDHMTSGNN GDHAVNSNKN  180
HGKPGFSHTA EKKKEPKLGS LSKEYDVIEL NAADLLAMYS YYCQVCGKGF KRDANLRMHM  240
RAHGDEYKTT AALTNPAKTM IAALSGDKVV GCGARKYSCP QEGCRWNKKH PRFTPLKSLV  300
CMKNHYKRRH CPKMYVCKRC EQKQFSLLSD LRTHEKHCGD LRWRCSCGTN FSRKDKLMGH  360
VALFVGHTPI IGGASCSFTK N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085498.10.0zinc finger protein STAR3-like
TrEMBLA0A199VE050.0A0A199VE05_ANACO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_008812337.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein