PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 79aa    MW: 8447.87 Da    PI: 10.4456
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.64.9e-15464156
       DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56
                 +C++C+vlr++C++ C ++p++     p++q++++ +++k++G++ +++ll+a p++ r++
  Aco025200.1  4 SCNGCRVLRKGCSEACSIRPCLqwirsPDSQANATVFLAKFYGRAGLINLLNAGPDHLRPA 64
                 6*******************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.958378IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-11465IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEACS IRPCLQWIRS PDSQANATVF LAKFYGRAGL INLLNAGPDH  60
LRPAYIPVAA RTRPAAGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005024e-67FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777707.13e-39PREDICTED: LOB domain-containing protein 40-like
RefseqXP_019255294.12e-39PREDICTED: LOB domain-containing protein 42-like
RefseqXP_020088069.12e-40LOW QUALITY PROTEIN: LOB domain-containing protein 41-like
SwissprotQ9M8861e-36LBD41_ARATH; LOB domain-containing protein 41
SwissprotQ9ZW966e-37LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A199UMM72e-39A0A199UMM7_ANACO; LOB domain-containing protein 41
STRINGXP_009777707.11e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-39LOB domain-containing protein 40