PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023608.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 390aa    MW: 42745.6 Da    PI: 9.7341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023608.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015357376323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ Cgk+F +++ L++H++++
  Aco023608.1 357 CSQCGKPF-NPEKLHSHMKSC 376
                  ********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0310431.4E-606387IPR021182Uncharacterised conserved protein UCP031043
PfamPF061361.5E-4316278IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEMGNGGGGG GEVRRVNVVY FLSRGGKVEH PHLIRVHHLH RAGVRLRDVK RWLSELRGKD  60
MADSFAWSYK RRYRSGYVWQ DLTDDDLITP ISDNEYVLKG SELIPHRPLH PTTTTTTAAA  120
INAQPFPPSS SSSSSFSEKS SRVAAAAEED EEEKEETKEE AAPATTAAAA EKLNPNPNPN  180
PNPNPAETVW IEAAEDDEVL SLNPPPLPPP PPRDSSDESA AQRRSAVFKI DAREAVQQQQ  240
IEEEKEKERG ERMAGESERR SQSRSLRRAS HALRSILTCR AVETNDAALR PVSRRERSSG  300
IGGDGSQLAA RRRTNLEGRR YDSRKSRSGG GKGTKMAGEK VGVASAASFK PFGAPYCSQC  360
GKPFNPEKLH SHMKSCKALK ARAKGYTNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095331.10.0protein UPSTREAM OF FLC isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107941213