PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 627aa    MW: 69854.8 Da    PI: 5.2171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022504.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.21.2e-1262416112373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 
                   +lL++c+ea+ +g++e+++ lLarl e+asp+g+p++R++ayfteA a r+a+ +++++++ +p+e +++   +++ + al+l+++vsPi+kf h+t
  Aco022504.1 241 LNLLTSCVEAIGAGNHEAVNYLLARLGEQASPKGTPIHRVVAYFTEAVALRVAKLWPHIFSITSPRELTDHLedEENDAIALRLLNHVSPIPKFLHFT 338
                  689***************************************************************999877556666777888************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  +N+ +l+a+eg+ervHi+Dfdi+qGlQWp+L+q+LasRp++p+++RiTgvg+     ++el +tg rL++fAe+l++pfef++ v++rled++l++L+
  Aco022504.1 339 CNERLLRAFEGKERVHIVDFDIKQGLQWPSLFQSLASRPQPPAHVRITGVGE----CRQELLNTGVRLSRFAEALNLPFEFHA-VTDRLEDVRLWMLH 431
                  ****************************************************....***************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgr 292
                  vk++E++aVn+vl +h+ll +++ ++    ++L l++s++P+vv  +eqeadhn+e++  r+ ++++yysa+fdsl+  l+++s  +r+k+E++ ++r
  Aco022504.1 432 VKRDECVAVNCVLVMHKLLYDETGSAL--MDFLGLIRSVKPEVVLTAEQEADHNDERWELRLGKSVQYYSAVFDSLDLCLASDSpAARAKIEQM-FAR 526
                  ******************966655554..89*****************************************************999*******.*** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                  ei+n+vaceg+er+erhe+++kW +++e+ G++++ ++e++  q +l+lr+++sd y+ve++    s+ l l W d+pL++vSaW
  Aco022504.1 527 EIRNLVACEGDERFERHERFSKWIKKMEDGGYRSAGIGEREIVQSQLILRMYASDKYSVEKRgegvSEGLSLRWVDQPLYTVSAW 611
                  *****************************************************999****99888889999************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.583214588IPR005202Transcription factor GRAS
PfamPF035144.1E-124241611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MLAGWHQYLR SEASLQLQVC QFQLQEKMGT QRLDLPCGFA KRENHPRVSL SLEKPIDPRS  60
TSCSFRQNPL AAPSSSSLVA KIEPTDQGAL WEESSRRLKR FHERDCFEES ILARAKRTRT  120
GEAGQLVGGG GGSGGGDEDI WFPESIERTP FVEEEKVFLV PSAASFPVDN TSLVGSFESE  180
KDFEWPNTKS QSDSSSSSGT GGLSPKPEIE TENRNDVVAY TVGGAGVDES TRIESEGLGL  240
LNLLTSCVEA IGAGNHEAVN YLLARLGEQA SPKGTPIHRV VAYFTEAVAL RVAKLWPHIF  300
SITSPRELTD HLEDEENDAI ALRLLNHVSP IPKFLHFTCN ERLLRAFEGK ERVHIVDFDI  360
KQGLQWPSLF QSLASRPQPP AHVRITGVGE CRQELLNTGV RLSRFAEALN LPFEFHAVTD  420
RLEDVRLWML HVKRDECVAV NCVLVMHKLL YDETGSALMD FLGLIRSVKP EVVLTAEQEA  480
DHNDERWELR LGKSVQYYSA VFDSLDLCLA SDSPAARAKI EQMFAREIRN LVACEGDERF  540
ERHERFSKWI KKMEDGGYRS AGIGEREIVQ SQLILRMYAS DKYSVEKRGE GVSEGLSLRW  600
VDQPLYTVSA WALSEVGGSS STSLPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-432406114374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800814.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN31e-163SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM0TF250.0M0TF25_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P05850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-161GRAS family protein