PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 627aa    MW: 69854.8 Da    PI: 5.2171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022504.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.21.2e-1262416112373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 
                   +lL++c+ea+ +g++e+++ lLarl e+asp+g+p++R++ayfteA a r+a+ +++++++ +p+e +++   +++ + al+l+++vsPi+kf h+t
  Aco022504.1 241 LNLLTSCVEAIGAGNHEAVNYLLARLGEQASPKGTPIHRVVAYFTEAVALRVAKLWPHIFSITSPRELTDHLedEENDAIALRLLNHVSPIPKFLHFT 338
                  689***************************************************************999877556666777888************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  +N+ +l+a+eg+ervHi+Dfdi+qGlQWp+L+q+LasRp++p+++RiTgvg+     ++el +tg rL++fAe+l++pfef++ v++rled++l++L+
  Aco022504.1 339 CNERLLRAFEGKERVHIVDFDIKQGLQWPSLFQSLASRPQPPAHVRITGVGE----CRQELLNTGVRLSRFAEALNLPFEFHA-VTDRLEDVRLWMLH 431
                  ****************************************************....***************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgr 292
                  vk++E++aVn+vl +h+ll +++ ++    ++L l++s++P+vv  +eqeadhn+e++  r+ ++++yysa+fdsl+  l+++s  +r+k+E++ ++r
  Aco022504.1 432 VKRDECVAVNCVLVMHKLLYDETGSAL--MDFLGLIRSVKPEVVLTAEQEADHNDERWELRLGKSVQYYSAVFDSLDLCLASDSpAARAKIEQM-FAR 526
                  ******************966655554..89*****************************************************999*******.*** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                  ei+n+vaceg+er+erhe+++kW +++e+ G++++ ++e++  q +l+lr+++sd y+ve++    s+ l l W d+pL++vSaW
  Aco022504.1 527 EIRNLVACEGDERFERHERFSKWIKKMEDGGYRSAGIGEREIVQSQLILRMYASDKYSVEKRgegvSEGLSLRWVDQPLYTVSAW 611
                  *****************************************************999****99888889999************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.583214588IPR005202Transcription factor GRAS
PfamPF035144.1E-124241611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MLAGWHQYLR SEASLQLQVC QFQLQEKMGT QRLDLPCGFA KRENHPRVSL SLEKPIDPRS  60
TSCSFRQNPL AAPSSSSLVA KIEPTDQGAL WEESSRRLKR FHERDCFEES ILARAKRTRT  120
GEAGQLVGGG GGSGGGDEDI WFPESIERTP FVEEEKVFLV PSAASFPVDN TSLVGSFESE  180
KDFEWPNTKS QSDSSSSSGT GGLSPKPEIE TENRNDVVAY TVGGAGVDES TRIESEGLGL  240
LNLLTSCVEA IGAGNHEAVN YLLARLGEQA SPKGTPIHRV VAYFTEAVAL RVAKLWPHIF  300
SITSPRELTD HLEDEENDAI ALRLLNHVSP IPKFLHFTCN ERLLRAFEGK ERVHIVDFDI  360
KQGLQWPSLF QSLASRPQPP AHVRITGVGE CRQELLNTGV RLSRFAEALN LPFEFHAVTD  420
RLEDVRLWML HVKRDECVAV NCVLVMHKLL YDETGSALMD FLGLIRSVKP EVVLTAEQEA  480
DHNDERWELR LGKSVQYYSA VFDSLDLCLA SDSPAARAKI EQMFAREIRN LVACEGDERF  540
ERHERFSKWI KKMEDGGYRS AGIGEREIVQ SQLILRMYAS DKYSVEKRGE GVSEGLSLRW  600
VDQPLYTVSA WALSEVGGSS STSLPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6723461113378Protein SCARECROW
5b3h_A4e-6723461112377Protein SCARECROW
5b3h_D4e-6723461112377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112577.10.0scarecrow-like protein 28
SwissprotQ9LWU91e-170DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A199V7P40.0A0A199V7P4_ANACO; Scarecrow-like protein 28
STRINGXP_008800814.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-161GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]