PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 326aa    MW: 34665.8 Da    PI: 6.6541
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022238.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.14.2e-314106198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p + r+++++sl+yeA+ r+ +P+yG+vg+++++++q++q+++e
  Aco022238.1   4 SCNGCRVLRKGCTEDCSIRPCLqwiknPESQANATLFLAKFYGRAGLINLINAGPAHLRPAIFRSLLYEACGRIANPIYGSVGLLWSGNWQVCQSAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallk 98 
                  ++l +
  Aco022238.1 102 AVLKG 106
                  98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3223109IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTEDCS IRPCLQWIKN PESQANATLF LAKFYGRAGL INLINAGPAH  60
LRPAIFRSLL YEACGRIANP IYGSVGLLWS GNWQVCQSAV EAVLKGAPVK PIPSVESAAA  120
PLLSPSPPPL ITTAAAAAAN NKPNNNYNDI RHVSKNTKNH HPQAAELLRV SAKTRARFKR  180
SAGAKPCAAP ARGPISDCRQ RRPQSPDSSA SRASDDDENG AAPRADDDVE FRESDRLSVD  240
TVEAGSHVSQ AEPSPAVEGG ADQEDETEEE AEEAAAVGLE LTLGLEPVSA TTRPPRRSSA  300
TETRCELSAF TSDSFRLDLG LQLSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106187.10.0LOB domain-containing protein 42-like
TrEMBLA0A199V7X40.0A0A199V7X4_ANACO; LOB domain-containing protein 41
STRINGXP_008799243.11e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-72LOB domain-containing protein 41