PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022096.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 665aa    MW: 71906.4 Da    PI: 6.2309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022096.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.82.9e-16389435455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Aco022096.1 389 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 435
                  6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-21383443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-20383446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-17388439No hitNo description
PfamPF000109.7E-14389435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MTNNSSSDRS SFMPDNDFVE LLWEDGQIVM QGQSSRPKRS FVPTPFNPSY NNRFQDKDIK  60
NEILPKQLNH FESGDPTVRH DFFTSDPLND KDDDDDDSVP WINYPMVDDS LSNDFCSEFL  120
AEFSGLNPNN VSISHNTDQI VRGSSSMENN HAPSKAVIGG SGGFTSRSGQ LLESSQQHLN  180
SGHAVKSKAT DFGTASSIVT HSRMPQPSGT SPLLNFSHFS RPVSLAKANL ESMERLRSNE  240
KAFTAPTSSN PPESTLIQST GGFKELRPSS ANTPKEMVSL EHTQALCQQE MPRKNNNHTA  300
VANSNCINQQ GSGFAPQKGP ETIVASSSVC SGNSAGAASD DPKHGLKRKD CEGEDSGNHS  360
EDVEDESVGL KRPANVRATK AKRTRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK  420
ASMLDEAIEY LKTLQLQVQM MSMGGSLCMP PMMLPPGMQQ MHLPSMAPHY AQMGVGMGLN  480
VRLGYGIGPL DMSSSPNCPL IPVPPIHCGT QFPCPTVPGA QVRPAMAGPG NLPMFAIPGL  540
GAIPSAVPRI VPQLGSFSGL AVMANPVPVP ASDTTTPLNC KEHREHSMNL ERKKSSSDSQ  600
KTPFAPSALA QSNQTLHSSG SGGANSDCSL NFEWPYDLHE HDGLGFDFCA ICAKAVQAED  660
FGMLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393398ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086865.10.0transcription factor PIF3-like isoform X1
RefseqXP_020086866.10.0transcription factor PIF3-like isoform X1
RefseqXP_020086867.10.0transcription factor PIF3-like isoform X1
RefseqXP_020086868.10.0transcription factor PIF3-like isoform X1
RefseqXP_020086869.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A199V9210.0A0A199V921_ANACO; Transcription factor PIF3
STRINGXP_008800313.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-41phytochrome interacting factor 3