PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021879.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 465aa    MW: 51494.7 Da    PI: 5.014
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021879.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-351202122103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k y++++d++++ ++swse +nsfv++d++ fa+++LpkyFkh+n++SFvRQLn+YgF+kv++++          eF+++ F +++k+ll++i 
   Aco021879.1 120 FLTKCYDMVDDPATDATVSWSEGNNSFVIWDPHAFARDLLPKYFKHNNISSFVRQLNTYGFHKVDHDR---------YEFANEGFLRDQKHLLKTIV 207
                   9*****************************************************************99.........78****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
   Aco021879.1 208 RRKPS 212
                   *9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-37112204IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-56116209IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-34117209IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-30120209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18120143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18158170IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340159183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18171183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVRVATYFAM TFGAFLFWQS MDRLHVWIAL HQDEKLKMPL TRSQAAGAAE AADAEEVGTS  60
VTSGSSGIHE LQDQLAKLTD LVAQQAAAAR HVAMEAENSS SAGGGGGGGA APQPPVVPPF  120
LTKCYDMVDD PATDATVSWS EGNNSFVIWD PHAFARDLLP KYFKHNNISS FVRQLNTYGF  180
HKVDHDRYEF ANEGFLRDQK HLLKTIVRRK PSHNAAQHPP SQAKNTSVNA CIEVGKFGLE  240
EEIERLKRDK TVLMQELVKL RLHQQSTDHE LQSLRQRLQG MEQNQQQMMS FLAMAVQSPA  300
FLAKLVQKSG NSNRWKTEAN KKRRLPALEQ GNNITYPESS SSDGQIIRYQ PLVTESFNSS  360
MPPSVPNSHI SEQLQNMANS ANNLSECGDF ILPDYLEQLL ASPPLDNGVG PDPESLGILD  420
LSIDDFDFSE QDIQMEVAQD MVPDEINGGS QSRPEMDHVF LEIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2710820917129Heat shock factor protein 1
5d5v_B1e-2710820917129Heat shock factor protein 1
5d5v_D1e-2710820917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6648127e-88KM664812.1 Ananas bracteatus clone 49806 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111652.10.0heat stress transcription factor A-1-like
SwissprotQ84T611e-108HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A199UZ010.0A0A199UZ01_ANACO; Heat stress transcription factor A-1 (Fragment)
STRINGXP_008775686.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-100heat shock transcription factor A1D
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]