PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021664.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 356aa    MW: 37415.6 Da    PI: 5.618
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021664.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.43.6e-36591667100
          TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...............k 89 
                  r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt++ +a ++ +++   +  ++s++               +
  Aco021664.1  59 RNRDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLQQAEPAIIAATGTGTVPAIAT-TVDGTLQIPTQSAAaglegggggggggedS 155
                  899********************************************************99999555.444444444444444566677777776542 PP

          TCP  90 aaksaakskks 100
                  aak  +k +++
  Aco021664.1 156 AAKRRKKLQPT 166
                  22222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-3060153IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00960114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELERQDKEE EEEEEEELLR TAAAVPMHRF IVPKPEPMEL FGSLQLIRKQ QQQQAGGGRN  60
RDRHTKVEGR GRRIRMPAVC AARIFQLTRE LGHKSDGETI RWLLQQAEPA IIAATGTGTV  120
PAIATTVDGT LQIPTQSAAA GLEGGGGGGG GGEDSAAKRR KKLQPTRAAA TTTTTPTPAM  180
PTPMPMPMPP AAAAAAAYYP IVADSIFQVG GGGGGGAISM SSGLAPIAAG PQGLLPVWVV  240
PSPGVAAGPS SQAQLWAIPT PPQIIGLAAP PPPEAQPPPS APSGGAAEKG AELQLMGCES  300
EERRRRGGGE EGGDHHHLHH HHHHHHHDHH HHHDDGPEEE EDDEEEPVSE SSNEE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458661e-58EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091451.10.0transcription factor PCF2-like
SwissprotA2YXQ13e-76PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH63e-76PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A199W8850.0A0A199W885_ANACO; Transcription factor PCF2
STRINGXP_008809784.13e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-44TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]