PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021629.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 308aa    MW: 33693.7 Da    PI: 6.2349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021629.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-1755105155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++ GVr+++ +grWvAeI+       ++ r +lg+f taeeAa+a++aa+  l+g
  Aco021629.1  55 TKFVGVRQRP-SGRWVAEIKG----TtQKIRMWLGTFETAEEAARAYDAAACLLRG 105
                  699*******.7******766....1346**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1355105IPR001471AP2/ERF domain
SMARTSM003803.7E-3256119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2656112IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1956113IPR016177DNA-binding domain
PROSITE profilePS5103219.33556113IPR001471AP2/ERF domain
PRINTSPR003671.1E-75768IPR001471AP2/ERF domain
CDDcd000189.06E-1657112No hitNo description
PRINTSPR003671.1E-77995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELQFQLHQN LDQSTYSYDD HVPVVSKTTK SKGRSPLKTK KTTTAAAAAA ATAATKFVGV  60
RQRPSGRWVA EIKGTTQKIR MWLGTFETAE EAARAYDAAA CLLRGANTRT NFLLADCPPP  120
DSALTSRIHA LLRLHQLKKK HAQPNPPPPP PPVSTITTAT TTVSFASIAT ENENVPTQLS  180
DEEVYRPCFL GEFDQPGSTN QPPSDHSCSF VSTDSGFHRL PPAYGGFELD EICASDRSTN  240
TSTEMSEFER IKVERQISAS LYAMNGVQEY YDILHNTYCG GGDEDAALWD LPPLCHLSQN  300
LIRIDTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126207e-41CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804361.11e-69PREDICTED: ethylene-responsive transcription factor RAP2-11-like
STRINGGSMUA_Achr4P28640_0016e-56(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-31related to AP2 11