PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 575aa    MW: 62374.8 Da    PI: 4.5915
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.9e-36291212103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sw + +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++sF +g+k+ll++i+
   Aco020850.1  29 FLSKTYDMVDDPATDAVVSWGNGNNSFVVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANESFLRGQKHLLKTIN 116
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
   Aco020850.1 117 RRKSS 121
                   **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3922113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3524118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6125118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGRGGGGAAA SAAAAGPNPS LNGNAPPPFL SKTYDMVDDP ATDAVVSWGN GNNSFVVWNT  60
PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NESFLRGQKH LLKTINRRKS  120
SHPHNETPQP KSQTAACVEV GKFGLEEEIE RLKRDKNILM QELVRLRQQQ QATDQQLHTL  180
GNRLQGMEQR QQQMMSFLAK AMQSPGFLAQ FMQQNDSNKR IAAASKKRRL PKQEAGLDAG  240
SNSPDGQIVK YQPMINEAAK AMLRQILKLD GSSPPRLEQL SNSDNFSLEN FMPPSEATTF  300
DSTSSNTNSG VTLAEVPSGL SVPYVTASTG FSAICLSSAA SEIQSPIGLS DNKNSSEELR  360
DMDVLSSVPE TIPSPSPTDM SIPEFPELQD IVSEDSVVNI PGESFVGACI NPIAEVEADN  420
AVPIETDDIL YGDDEQKLPG IIDTFWEQFL ASSPISSEAV EEVELSRQEG KVVMQQRPQN  480
SNNGWDSARN MENLTEQMGL LSSDRKESYA CYAAALGIPV ATNLSLNWGS ICRAAEAGAV  540
HLASAPCAHT RACACACACV ALDLLAIDPV EVVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2731189129Heat shock factor protein 1
5d5v_B4e-2731189129Heat shock factor protein 1
5d5v_D4e-2731189129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6653091e-104KM665309.1 Ananas bracteatus clone 50408b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096046.10.0heat stress transcription factor A-1-like isoform X1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A199UEJ30.0A0A199UEJ3_ANACO; Heat stress transcription factor A-1 (Fragment)
STRINGOPUNC03G38490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-124heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]