PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020656.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 273aa    MW: 30099.2 Da    PI: 10.1132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020656.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-063052123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Aco020656.1 30 YVCEICNQGFQRDQNLQMHRRRH 52
                 9*********************9 PP

2zf-C2H217.11.6e-05115137123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k +  +s++k H++t+
  Aco020656.1 115 WVCAKCSKAYAVQSDYKAHLKTC 137
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-52753No hitNo description
Gene3DG3DSA:3.30.160.609.7E-62952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.973052IPR007087Zinc finger, C2H2
SMARTSM003550.00523052IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359032120IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035521079109IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-4106136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035593115142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
KRKRRPAGTP DPDAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK  60
REGGAGGEGA GAEARKRVFV CPEPSCLHHD PCHALGDLVG IKKHFRRKHS THRQWVCAKC  120
SKAYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DQCTAGRAGA RADLPSAATA  180
VQLANARRIR HQAQVELSRA IALRDHAVKQ INATLLQITC CSCKSRFRAK VASCRPDDDN  240
SLAASYVSSA VTGGEDAKNR EHNNKVAKMA AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17113165557Zinc finger protein JACKDAW
5b3h_F3e-17113165557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067961e-108AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195951e-108AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
GenBankAK2889641e-108AK288964.1 Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence.
GenBankCT8336801e-108CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110596.10.0protein indeterminate-domain 14-like
SwissprotF4IPE31e-107IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLM0T0Y81e-118M0T0Y8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P23130_0011e-118(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-107C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]