PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020381.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 264aa    MW: 28209.2 Da    PI: 6.8435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020381.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12122164754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++YIk+L
  Aco020381.1 122 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYIKEL 164
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-5122164No hitNo description
PfamPF000104.2E-10122164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15122176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00229220246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSELLFCSEG TARLNCFGGP QFSPEPNFDC LSEVCSPFAA AGLCGSSAPP AAAAAAAAAA  60
HAAIHEEMSC GGASGGGRNI CKAEQKQSAG TPEPLMLAAS SCLERKNARP KKADGLPSKN  120
LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY IKELMARIKA LQEEAEAESD  180
PRNRPNQLGA LKDQLNPSET TLMRSSTKFD VERREGDTHV EVCCAAKPGL LLSMVSTLDA  240
LGLEIHQCVA SCFSDFGMQA SCLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123130ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092114.10.0transcription factor bHLH61-like
SwissprotQ9LSL11e-55BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A199UPK91e-172A0A199UPK9_ANACO; Transcription factor bHLH93
STRINGXP_008806159.18e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-57beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]