PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019945.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 1399aa    MW: 155582 Da    PI: 6.3207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019945.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0007713661392123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   y+C+   Cg +F+  s++ rH r+  H
  Aco019945.1 1366 YECKvaGCGLTFRYISDFSRHRRKtgH 1392
                   89*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.8E-131555IPR003349JmjN domain
PROSITE profilePS5118313.3981657IPR003349JmjN domain
PfamPF023752.1E-131750IPR003349JmjN domain
SMARTSM005581.4E-43214383IPR003347JmjC domain
SuperFamilySSF511976.87E-26215381No hitNo description
PROSITE profilePS5118433.316217383IPR003347JmjC domain
PfamPF023731.3E-35247366IPR003347JmjC domain
SMARTSM003552312831305IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.45E-513051343No hitNo description
SMARTSM003552.813061330IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5113061335IPR007087Zinc finger, C2H2
PROSITE patternPS00028013081330IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-413121336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.53113361365IPR007087Zinc finger, C2H2
SMARTSM003550.002913361360IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-913371360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013381360IPR007087Zinc finger, C2H2
SuperFamilySSF576674.48E-1013461388No hitNo description
Gene3DG3DSA:3.30.160.604.9E-1013611389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.47313661392IPR007087Zinc finger, C2H2
SMARTSM003550.1113661392IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013681392IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1399 aa     Download sequence    Send to blast
MSDPEIPSWL RSLPRAPEYR PTETEFADPI AFISRIEREA AAFGICKVIP PLPKPSKRFV  60
LANLNRSLSK SPDLSSSAAA AAPTTRHQEL GTRRARTPVP FHKQVWQSGE LYSVEQFEAK  120
SKAFARAQLG GFKEVTPLLV ESLFWKAAAE KPIYVEYAND VPGSGFAAPE EPFKYYTYRR  180
RRRKREFHQE KIQEPMCPLP VGSDVESTGS AGWKLSNSPW NLQVIARSPG SLTRFMPDEV  240
PGVTSPMVYI AMLFSWFAWH VEDHELHSLN FLHMGAPKTW YAIPGDHAAA LEEIVRVQGY  300
GGNVDRLAAL AMLGGKTTLL SPEVLVASGI PCCRLVQNPG EFVVTFPRAY HIGFSHGFNC  360
GEAANFATPQ WLKFAKDAAV RRAAMNYLPM LSHQQLLYML TVSFISRVPG ELLPGVRTSR  420
LRDRKKEERE FLIKRAFLHD MMNENQLLCS LHAKESTMGA VLWEPDLLPS SCLVPHERMV  480
DGDSAMEMIQ CKLKNSKPLE NVHEGTDHLA SIQSQNILSV KTQINACDAE CSNSKEETIN  540
YEDAEGEADE EDLPFGLRID SGSLACVACG ILGYPFMAIL QPSEKALNGL SPVNCEESTQ  600
KIEVSECTSQ PSLASIIKKF DSAKESSLNH VEARDQETSD GDKARIGHQS LEGNTCRISS  660
SQIDSPDGRK QGCSTAIFEH PINQLSHQND SSSPSRIGIV STEDDISNMN ISGEKAQTDA  720
DRLLGAGVGQ CDEVTKWNTH NGFLRPRIFC LQHALEIEEL LQSKGSAHVL IICHSDYLTI  780
KALAMSIAEE IDVQLDCEDI PLQNASPSDM HLINISIDDE EHEEDGKDWS SSLGVNLQYR  840
AKLRKQSSAK EQLALSLGGI FSDPAPVSVV SNLKWLCKKS RTPCKVVGTS LPRSHLHKDT  900
NKFGRSHCYY ENVDEENMNN LYAVPITIAE HLQINQLGLS GQSVSSSHEV THSLNSQGSP  960
VDDNTDFVSG GGELEIHSDK SVNTVSLSNP MSSESDISYY NIPILARFDI PEKTTKEYSL  1020
NRKHDNVENL EVKEKTMRLE DESLQVEETK ILDEMNSKLD GPQSAKLDCE SSLSAVSIAE  1080
NTQENSWAEI PDSEGNHAET LVLEESLSAP VLSLNASDIL LEVVDEERQC DAALAKESLA  1140
LDDAALNEIH HSTFKTTVVD NAEAKDNSEM LQKAQLTNVV KASTEVCASF EAVVRSGKAT  1200
RDIIHYVRRK NKRKREEEQH KGDSSYSCIG FIRSPCEGLR PRSGRNIPLE SDTPVVPKKV  1260
MKAVKKPQIS TVQGGKNRVE GQFSCDLEGC RMRFRTRREL SLHKQNRCTL EGCGKRFSSH  1320
NYAARHQCVH IDDRPLKCPW KGCRMTFKWA WARTEHVRVH TGERPYECKV AGCGLTFRYI  1380
SDFSRHRRKT GHYVSASV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-7293978346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-7293978346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178184RRRRRKR
212071213RRKNKRK
312081215RKNKRKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093944.10.0lysine-specific demethylase SE14
TrEMBLA0A199W7Q30.0A0A199W7Q3_ANACO; Lysine-specific demethylase SE14
STRINGSi033886m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein