PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15129.4 Da    PI: 10.5837
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019842.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.4e-2875124251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  +i+n + rqvtfskRrng+lKKA+ELS+LCdaev +i+fsstg+l+e++s
  Aco019842.1  75 KIDNLTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLHEFAS 124
                  69**********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.35766126IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-3966125IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-2866131IPR002100Transcription factor, MADS-box
CDDcd002651.15E-3967130No hitNo description
PROSITE patternPS00350068122IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-286888IPR002100Transcription factor, MADS-box
PfamPF003193.8E-2575122IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-2888103IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-28103124IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSTHPFCPGA SRTMTHEAAG GKERSNAAGS HCLPMPATCH CPYGGGRSQG TGKTFEILIR  60
SEDKGMGRGK IVIRKIDNLT SRQVTFSKRR NGLLKKAKEL SILCDAEVGL IVFSSTGRLH  120
EFASSRYQHP LPRPSLPHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-1866135170MEF2C
5f28_B7e-1866135170MEF2C
5f28_C7e-1866135170MEF2C
5f28_D7e-1866135170MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGcassava4.1_032220m5e-32(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.28e-32AGAMOUS-like 16