PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019563.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 225aa    MW: 24552.2 Da    PI: 6.1142
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019563.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.29.5e-3225124199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCa+Ck++r++Ca+dC+la+yfpae++ +f++v+k+FG sn++k+l+a  +e  r++a+++l++eAe+r rdP  G+++ + +l+ + + l+  +a+l
  Aco019563.1  25 ACASCKHQRKRCAEDCFLAKYFPAEKQGEFRAVQKVFGLSNLTKMLRANATEAaRQRAARTLTWEAEWRDRDPADGCFREVAELRCENRLLRDRIAAL 122
                  7**********************************************9977766********************************999999988877 PP

       DUF260  98 ke 99 
                   +
  Aco019563.1 123 TQ 124
                  66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.98824126IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2925121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQTNGGGGGG GRSCSDGESA GLRQACASCK HQRKRCAEDC FLAKYFPAEK QGEFRAVQKV  60
FGLSNLTKML RANATEAARQ RAARTLTWEA EWRDRDPADG CFREVAELRC ENRLLRDRIA  120
ALTQALTCQY PTLPPLPQFL HHDALQNDTV SIILNNNGNS NSNGNNNLVR ENLSYYNFCN  180
GPVGPVLGAT SISSPPSFVD QGNFSPFNDD DEESNVLLHP DAVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-16191265112LOB family transfactor Ramosa2.1
5ly0_B5e-16191265112LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098050.11e-167LOB domain-containing protein 12-like
TrEMBLA0A199UW001e-104A0A199UW00_ANACO; LOB domain-containing protein 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-23LOB domain-containing protein 2