PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 182aa    MW: 19006.2 Da    PI: 10.1751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-181766255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr++k +g++v+eIr p++   r r++lg+++t+e+Aa+a +aa+ +l+g
  Aco018980.1 17 RYKGVRRRK-WGKFVSEIRLPNS---RNRIWLGSYDTPEKAARAFDAAAVCLRG 66
                 7*****998.**********943...49************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.4171776IPR001471AP2/ERF domain
CDDcd000181.09E-171778No hitNo description
SMARTSM003803.7E-311782IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-271778IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-181778IPR016177DNA-binding domain
PfamPF008473.4E-111766IPR001471AP2/ERF domain
PRINTSPR003675.5E-91829IPR001471AP2/ERF domain
PRINTSPR003675.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTKSAAEEAA AAAAERRYKG VRRRKWGKFV SEIRLPNSRN RIWLGSYDTP EKAARAFDAA  60
AVCLRGPLGS GRLNFPDSPP QLSSSATAAM THQQIREAAA SHANRAARAT TQQQQTAAAE  120
SPSTEEASDG MTPESEEAVD WSYMDLISPV GAKAAAKTAA AAAAAAAAAL RIPGRFFGAS  180
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-131076772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083161.11e-126ethylene-responsive transcription factor ERF017-like
SwissprotQ9S7L51e-36ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A199UHM91e-105A0A199UHM9_ANACO; Ethylene-responsive transcription factor ERF018
STRINGXP_008784342.11e-46(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]