PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017187.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GeBP
Protein Properties Length: 384aa    MW: 41357.7 Da    PI: 4.6899
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017187.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.72.3e-30105204297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                  lfqrlw+ee e+v+L+G+ +f++++g+   +++ d+  fy+ +++++ +++sksqlveK+rrLKkK+ ++v++ ++  ++++f+++h+q  fe+++ i
  Aco017187.1 105 LFQRLWTEEEELVILRGFSEFTTRRGTafASHQyDTGPFYDEMRRQLPLDFSKSQLVEKLRRLKKKYLNCVARlRSAADSFAFRSPHEQALFEIARNI 202
                  79************************99877778***************************************77788899***************** PP

       DUF573  96 Wg 97 
                  W 
  Aco017187.1 203 WT 204
                  *7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.8E-27106203IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MASAEEEEKE RAVFDDDDGD DSEEEEEEED DDDDTDDDLP AAAAAAAPPP PASPMEAERH  60
TDSTADADDG APTTSGAKPN RNRNPNPNRG AHGGGAAAAE EARRLFQRLW TEEEELVILR  120
GFSEFTTRRG TAFASHQYDT GPFYDEMRRQ LPLDFSKSQL VEKLRRLKKK YLNCVARLRS  180
AADSFAFRSP HEQALFEIAR NIWTPSSDPN PDPANPIINN SDSDRKPPRS RSRRQQQRQQ  240
RRLRRATAAA AAAAAAAEDP IPVPVPVPVP VAVPVPVPVP ITVTAENPTP KPPPPPPPLA  300
TPAAASDLSP LLFKELVGAA IGGPLLGFGG GGGGGGSSVS NLGDGRWRKQ QILELEVYLK  360
RLELLREHIE STLRELKGSS GGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108055.10.0probable transcription factor At3g04930
RefseqXP_020108057.10.0probable transcription factor At3g04930
RefseqXP_020108058.10.0probable transcription factor At3g04930
RefseqXP_020108059.10.0probable transcription factor At3g04930
RefseqXP_020108060.10.0probable transcription factor At3g04930
RefseqXP_020108061.10.0probable transcription factor At3g04930
TrEMBLA0A199W0170.0A0A199W017_ANACO; Mediator-associated protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-31DNA-binding storekeeper protein-related transcriptional regulator