PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 319aa    MW: 36552.7 Da    PI: 6.0861
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017163.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.9e-36261182103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g k+ll++i+
   Aco017163.1  26 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKRGAKHLLSEIH 113
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
   Aco017163.1 114 RRKSS 118
                   **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMDQSHK PVPAPFLTKT YQLVDDPCTD HIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV ADRWEFANEF FKRGAKHLLS EIHRRKSSQP  120
SSHHYYHSPP PPPLPPPSSY NHHNPHPEDH MSISWINDPS ALLPPPAHSN VGHDHNNASE  180
FLSALSEDNQ RLRRRNSVLL SELTHMKKLY NDIIYFLQNH VTPISPRPSN CSSRILELGP  240
STQYHPPHPP HPPPPPLYRI RNCAMEIAEE EEEEEEEEEE ETDGGAVKLF GVPIHGKKRL  300
HEETATVPDE ESDDHGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-222211817123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107980.10.0heat stress transcription factor B-4b-like
RefseqXP_020107981.10.0heat stress transcription factor B-4b-like
RefseqXP_020107982.10.0heat stress transcription factor B-4b-like
RefseqXP_020107983.10.0heat stress transcription factor B-4b-like
RefseqXP_020107984.10.0heat stress transcription factor B-4b-like
RefseqXP_020107985.10.0heat stress transcription factor B-4b-like
RefseqXP_020107986.10.0heat stress transcription factor B-4b-like
RefseqXP_020107987.10.0heat stress transcription factor B-4b-like
SwissprotQ7XHZ01e-105HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A199VKQ80.0A0A199VKQ8_ANACO; Heat stress transcription factor B-4b
STRINGXP_008794230.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-85heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]