PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 446aa    MW: 48578.1 Da    PI: 4.6379
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.6e-35401322103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sw + +nsfvv+d+ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k ll++i+
   Aco016980.1  40 FLSKTYDMVDDPATDAVVSWGNGNNSFVVWDPPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKPLLKTIN 127
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
   Aco016980.1 128 RRKAS 132
                   **976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3833123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3535129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6036129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3040129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGAGGGGGG AGGGGAAAAV AAAAAAGANP SLNGNAPPPF LSKTYDMVDD PATDAVVSWG  60
NGNNSFVVWD PPEFARDLLP KYFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
PLLKTINRRK ASHPPSQPHN NNASVAACVE VGKFGLDEEI ERLKRDKNVL MQELVRLRQQ  180
QQTTDHQLQT LGNRLQGMEH RQQQMMSFLA KAVQSPGFLA QFVQQNDSNR RIVSVNRKKR  240
RLPNQEGSPD GQIIKYQPLM NEAAKAMLRK ILNMDSPPCF DSSNSSDSLL LENFEGASST  300
TRNSGVTLAE VSSFSAEAQS PTINLADKNS PTVPGTSIPD FPELQNMVTD KNSTVDVPEK  360
SFVVPDPEGI YVNPNAAEED DVVPIELDGL LYDGDQKLPE IIDSFWEQFL ATSPLLGDSE  420
EVESSAQNME HLTEQMGLLS SDPRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2651291129Heat shock factor protein 1
5d5v_B2e-2651291129Heat shock factor protein 1
5d5v_D2e-2651291129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6653091e-177KM665309.1 Ananas bracteatus clone 50408b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094868.10.0heat stress transcription factor A-1-like
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A199UK450.0A0A199UK45_ANACO; Heat stress transcription factor A-1
STRINGOPUNC03G38490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-115heat shock transcription factor A1E
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]