PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016639.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 299aa    MW: 31004.7 Da    PI: 11.3696
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016639.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2153.8e-66229884374
         GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisq.GlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
                  ++e+ P+++++ l+aN a+l+a+   + +H++Dfd++  G+Q +aL++aLa+R   +p lRiT+v +p+s      +    ++g+rL k+Ae+ gv +
  Aco016639.1   2 LHELHPCFRLGLLAANLAVLDAARDRSGIHVLDFDVGGgGAQHAALIRALAER--RAPGLRITAVFDPTSPftpaAAAGALAVGDRLVKLAERAGVGL 97 
                  7899********************************86268***********9..5789********998889988889999**************** PP

         GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                  +f+v v++r ++l+  +L + pgEalaVnl+++l r++desvs +++rde+L+ v+ l+P+vv +ve++++ n+++F++rf+ea+ +y al++sl+a 
  Aco016639.1  98 RFSV-VSRRAAELDAAALGCVPGEALAVNLAFALSRVPDESVSPANPRDELLRRVRALRPRVVALVERDMNANTAPFAARFAEACAHYGALLESLDAA 194
                  ***9.7*****************************************************************************************888 PP

         GRAS 275 lpres.....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                  +++++      er+ vE++l +++ +     +g + +er+   ++   r+++aGF++vpl+  +++ +++ l  +  + g++++ee g + + W++r 
  Aco016639.1 195 AASAAslggaAERARVEAALAAQRRERRWRGRGGA-VERCGVSGS-GGRMGMAGFGAVPLGPGVVEPVRTRLGSIRpNPGFTIKEEAGGIGFAWMGRV 290
                  77766355556666666666655555555555554.667665555.689***************************9********************* PP

         GRAS 367 LvsvSaWr 374
                  L+++SaWr
  Aco016639.1 291 LTFASAWR 298
                  *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.4031277IPR005202Transcription factor GRAS
PfamPF035141.3E-632298IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLHELHPCFR LGLLAANLAV LDAARDRSGI HVLDFDVGGG GAQHAALIRA LAERRAPGLR  60
ITAVFDPTSP FTPAAAAGAL AVGDRLVKLA ERAGVGLRFS VVSRRAAELD AAALGCVPGE  120
ALAVNLAFAL SRVPDESVSP ANPRDELLRR VRALRPRVVA LVERDMNANT APFAARFAEA  180
CAHYGALLES LDAAAASAAS LGGAAERARV EAALAAQRRE RRWRGRGGAV ERCGVSGSGG  240
RMGMAGFGAV PLGPGVVEPV RTRLGSIRPN PGFTIKEEAG GIGFAWMGRV LTFASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-27229883375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397918.11e-120PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR76e-81SCL8_ARATH; Scarecrow-like protein 8
TrEMBLM0SSA21e-120M0SSA2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P26400_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.15e-19SCARECROW-like 8