PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016114.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 602aa    MW: 65805.4 Da    PI: 7.8187
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016114.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-351772672101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+++++++sws +++sfvv+++ efa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F kg+k++l++i+
   Aco016114.1 177 FLIKTYEMVDDAATDDIVSWSPTETSFVVWNPPEFAARLLPTYFKHNNFSSFIRQLNTYGFHKIDPER---------WEFANDYFIKGQKHQLKNIH 264
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Aco016114.1 265 RRK 267
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-61173266IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-35173266IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-37173266IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-31177266IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18177200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18215227IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340216240IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18228240IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAAPTPRPSA NRGLRAAATV EPRRCVVRDG SPSAVLAEHH ARGVASWRTG SRIGCGMGSG  60
LGWAAIMSAM VQRIQGSSAA AAAAAGARWE SLRRAAHAGT TIAAPPSSSR SPAASPPSLA  120
TTMTTPASRR GRGREREGSP LLLLLHHHHC RRRDLLLFLY TVMDGGGGGG GGGPAPFLIK  180
TYEMVDDAAT DDIVSWSPTE TSFVVWNPPE FAARLLPTYF KHNNFSSFIR QLNTYGFHKI  240
DPERWEFAND YFIKGQKHQL KNIHRRKPIH SHSHPPGSLA DSERAALEEE IERLTREKAS  300
LHNDLWRFKQ QQSGAKIQIE DLDRRLLDME QRQLKLIAFV QRAMRNPKFR DNLIKMAGAS  360
LLADSVDAIH KKRRLPGVEV TENSSFYDDH SSTSKPDANN LFQQDFCDKL QLGLCSAMTV  420
ASTQCSDDDN VSKNPECGRA VECLSDTGAS FCSSKNVLVP RQIDEGLFPC HLNLTLASSS  480
MQIDRNQYSN RTQSTEEQEP GNSTELNLAS TSRDDGLRKL VGNSSSTGGD SHANVTSLKE  540
GAPVSNELPA AQPARVNDVF WEQFLTERPG SSDTEEASSS LRANPSGEHQ EDRKQGSEDM  600
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2116326612129Heat shock factor protein 1
5d5v_B1e-2116326612129Heat shock factor protein 1
5d5v_D1e-2116326612129Heat shock factor protein 1
5hdg_A1e-211742668110Heat shock factor protein 1
5hdn_A1e-211742668110Heat shock factor protein 1
5hdn_B1e-211742668110Heat shock factor protein 1
5hdn_C1e-211742668110Heat shock factor protein 1
5hdn_D1e-211742668110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111908.10.0heat stress transcription factor A-5 isoform X2
SwissprotQ6K6S51e-163HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A199ULC00.0A0A199ULC0_ANACO; Heat stress transcription factor A-5
STRINGXP_008803687.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-106HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]