PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015494.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 477aa    MW: 50386 Da    PI: 11.0749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015494.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2838.7e-8715547656374
         GRAS  56 svselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                  s+ +++   p++++++   s+e+ +a++l++++sP++k++  +aN aIlea+ g+ ++H++Dfd++ G+Q + L++aLa+R+  p+sl+iT+v++p++
  Aco015494.1 155 STASCSTPPPSNPSRQ-LlSAEHRFATQLLHDASPCFKLGLAVANLAILEAARGHPKLHVVDFDVGSGAQHAELIRALAERRPRPASLKITAVADPAY 251
                  3334443334444444.269999************************************************************************998 PP

         GRAS 153 g....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                        ++ l+ +g+rL+k+A++ gv ++f++ v+ r ++l+  +L ++p+EalaVnl++ l r+ desvs +++rde+L+ v+ l P+ v +veqe+
  Aco015494.1 252 PlpaaAAKGLRDVGDRLSKLADRAGVGLRFSI-VSLRAAELDRASLGCEPDEALAVNLAFVLSRIADESVSPANPRDELLRRVRALAPRAVALVEQEM 348
                  8999999************************9.799************************************************************** PP

         GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                  + n+++F++rf+ea+ +y al++slea+l+r+s +r+ vE++ l+r+++n va eg er+er+e ++kWr+r+++aGF+p + +e   + +++  r +
  Aco015494.1 349 SGNTAPFAARFAEACAHYGALLESLEATLGRDSADRARVEAA-LSRKATNTVAREGPERVERCELFGKWRARMSMAGFRPGRSDEAWRSPVRARSRST 445
                  ******************************************.******************************************************* PP

         GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + +  +r +  +g+l + W++r L+++SaWr
  Aco015494.1 446 GpNPRFRGQGGRGWLGFSWMGRVLTFASAWR 476
                  *9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.21882455IPR005202Transcription factor GRAS
PfamPF035143.0E-84155476IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MASGFPGRDS RGSYAGFGGG SAVQIPFQGR SDGGGGGGGA GVLKRTLSEM ERRQQQMALQ  60
QALFLRSVKQ KIHMASPLSS DLGSLTSPSS ISSGCLVQGG PQREWGETMR QLISISAAPS  120
PSLPPPPPTM ANQSNPLSPS PSPSNSSSSN STASSTASCS TPPPSNPSRQ LLSAEHRFAT  180
QLLHDASPCF KLGLAVANLA ILEAARGHPK LHVVDFDVGS GAQHAELIRA LAERRPRPAS  240
LKITAVADPA YPLPAAAAKG LRDVGDRLSK LADRAGVGLR FSIVSLRAAE LDRASLGCEP  300
DEALAVNLAF VLSRIADESV SPANPRDELL RRVRALAPRA VALVEQEMSG NTAPFAARFA  360
EACAHYGALL ESLEATLGRD SADRARVEAA LSRKATNTVA REGPERVERC ELFGKWRARM  420
SMAGFRPGRS DEAWRSPVRA RSRSTGPNPR FRGQGGRGWL GFSWMGRVLT FASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3715847656375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783453.11e-132PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-100SCL8_ARATH; Scarecrow-like protein 8
TrEMBLM0SY101e-123M0SY10_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P12810_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-76SCARECROW-like 8