PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015479.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 168aa    MW: 18052.2 Da    PI: 8.2433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015479.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003788110123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs    L  H+r+H
  Aco015479.1  88 HECSICGLGFSMGQALGGHMRRH 110
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-93963IPR007087Zinc finger, C2H2
SMARTSM003552.54062IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.19E-740110No hitNo description
PROSITE profilePS501579.8064067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139127.1E-1188112IPR007087Zinc finger, C2H2
SMARTSM003550.2388110IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.70288115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
METEKAANLL LSLSSTHTRA IDEAIRRRKK ATRGAADGAF VCKTCSREFD SFQALGGHST  60
SHNRARSLDP AATRKKTTTT TTTTTQKHEC SICGLGFSMG QALGGHMRRH RAAMEDSAAA  120
TVGARRGEEG FDLNQLPPLE DEEENAPEIC GGGNGRGSER RLLELFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114177.11e-119zinc finger protein ZAT12-like
SwissprotQ9LX858e-20ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A199UMI81e-115A0A199UMI8_ANACO; Zinc finger protein ZAT8
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-22C2H2 family protein