PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015104.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family M-type_MADS
Protein Properties Length: 253aa    MW: 27924.9 Da    PI: 9.0267
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015104.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.5e-2495144251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  rie+   r+v fskRr g++KKA+EL vLCdaev +i+fs  gklyeyss
  Aco015104.1  95 RIEDRASRHVRFSKRRSGLFKKAFELAVLCDAEVGLIVFSAGGKLYEYSS 144
                  8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-3386145IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.62386146IPR002100Transcription factor, MADS-box
CDDcd002652.91E-3387158No hitNo description
SuperFamilySSF554554.84E-2988167IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-2688108IPR002100Transcription factor, MADS-box
PfamPF003191.4E-2395142IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-26108123IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-26123144IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGLHVNSFKE RLRCSAENNI RQLCVLCGGR RGISRVGPRT QLPLASCDLA MATPPSSSSP  60
SSLLLLLLLF FFFLLISRVR GLGEMPRRGK VELRRIEDRA SRHVRFSKRR SGLFKKAFEL  120
AVLCDAEVGL IVFSAGGKLY EYSSSSSIQE TFGRYQQFMK AEREVNEGDV TADLDLNTIA  180
SGDDDSSSSN IKSKLMSIAQ WAFEGNIDQL DSNELGQLER ALIEAVRLTT SRKIAVKGGD  240
GENVATVERQ RE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A9e-1688175288Myocyte-specific enhancer factor 2A
3kov_B9e-1688175288Myocyte-specific enhancer factor 2A
3kov_I9e-1688175288Myocyte-specific enhancer factor 2A
3kov_J9e-1688175288Myocyte-specific enhancer factor 2A
3p57_A9e-1688175288Myocyte-specific enhancer factor 2A
3p57_B9e-1688175288Myocyte-specific enhancer factor 2A
3p57_C9e-1688175288Myocyte-specific enhancer factor 2A
3p57_D9e-1688175288Myocyte-specific enhancer factor 2A
3p57_I9e-1688175288Myocyte-specific enhancer factor 2A
3p57_J9e-1688175288Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087029.11e-118MADS-box transcription factor 51-like
SwissprotQ9XJ612e-48MAD51_ORYSJ; MADS-box transcription factor 51
STRINGPavir.J02739.1.p3e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-28AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]