PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 280aa    MW: 31375.1 Da    PI: 8.1416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014163.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026688123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Aco014163.1 66 YSCSFCRREFRSAQALGGHMNVH 88
                 99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-66392No hitNo description
PROSITE profilePS5015711.2196693IPR007087Zinc finger, C2H2
SMARTSM003550.00986688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MHSIIMEQTK YNWMWARRQL SEGPLLGSSI QRIATPSSYH ESWEEQAFEK DSIGHLGGYT  60
WPPRSYSCSF CRREFRSAQA LGGHMNVHRR DRARLKQLSS SPSSIEDQEN NQQDRQNTCT  120
PLGHAHQVSS LPYSTPSNPN CGAVASLISS RVSEDSDPTL VSPPSYSSSL IKENTKEQLL  180
PAEQSLSDPA QVVMLELNLG RENSKQREAN FCRKLRDKSR DEEEIISSKR RCIDAIFPLV  240
MKSSPGEQQN IRSQVLKISP GPVGELDLEL RLGSHPKAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-136188229superman protein
2l1o_A5e-136188229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101340.11e-166probable transcriptional regulator RABBIT EARS
TrEMBLA0A2H3X4C33e-83A0A2H3X4C3_PHODC; zinc finger protein 11-like
STRINGXP_008778130.18e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-27C2H2 family protein