PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013873.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 302aa    MW: 32774.6 Da    PI: 6.3809
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013873.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.34.6e-37311212101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+ +g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g+k+ll++i+
   Aco013873.1  31 FLTKTYQMVDDPSVDDVISWNGDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVAPDR---------WEFANESFRRGEKQLLCEIH 118
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Aco013873.1 119 RRK 121
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-4022115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5927120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.07E-3627120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.5E-3331120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGPNPATSEE PPPAAAAAAA GQGQRTAPTP FLTKTYQMVD DPSVDDVISW NGDGSTFVVW  60
RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVAPDRWE FANESFRRGE KQLLCEIHRR  120
KISLAAAAAV PAGIPLAAAR VASPASSAST GSSGGGAAGR SKGESLTEEN ERLRRENTKL  180
AEELAQMKNL CNNILHLMSR YVSAEQFRMD AAAAAAAPGS EREGDGAIAK LFGVPIGIKR  240
PRESDLSPEV KPEPYDAKTN FKAAAAAEEA DEEEEEEEEG GGHHRRWFSL RCKWPIQRAC  300
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-253112520125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093480.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C83e-87HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A199UIC40.0A0A199UIC4_ANACO; Heat stress transcription factor B-2b (Fragment)
STRINGXP_008790507.15e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-56heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]