PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013644.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28251.4 Da    PI: 9.8024
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013644.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.8e-181150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+  r +t  kRr+g+lKK +ELSvLC++++++i++++
  Aco013644.1 11 IANDATRRTTMKKRRKGLLKKVHELSVLCGVDACLIVYGT 50
                 8899**********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-17161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.759150IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-19179IPR002100Transcription factor, MADS-box
CDDcd002666.22E-15288No hitNo description
PRINTSPR004046.2E-11323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-161154IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MARKKVKLMW IANDATRRTT MKKRRKGLLK KVHELSVLCG VDACLIVYGT PSDRFPADIL  60
PSEPRGVARV VTQFRGLPEG ERRRKMVSQE SFLRQRVGKM RDAQRRQLRE NRQGELLALV  120
AEGLSGRRSS FSNLAQVEEV ASLTWMLDAK FKSVYDQLET QLRQLYSATP EGGVPLQAAA  180
EEAAVRVVDH DPQSAAAAAA AAVEVLNRHD SSLLPPADTP TPQPPMVGPW AELQTPYLDP  240
YVADPWLDSF YPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLMWIANDATRRTTMKKRR
22125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101462.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A199UHJ41e-114A0A199UHJ4_ANACO; Agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-29AGAMOUS-like 80