PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013643.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 605aa    MW: 65175.5 Da    PI: 6.7608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH521.3e-16403449455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Aco013643.1 403 VHNLSERRRRDRINEKMRALQELIPNC-----NKTDKASMLEEAIEYLKTLQ 449
                  6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-21396461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.508399448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-21402475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.10E-17402453No hitNo description
PfamPF000103.9E-14403449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-18405454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MPLSEFLLKT TKSKPGTAQS KMPIPNSSSS DPFSISDHEF AELLWENGQI VLHGHASRSS  60
KKSWAAASAA DHPEKAPAKD NVDSVDAKNE QLGADLSVHQ EDDMVPWINF RIDDESLDAD  120
PVHNDFYSEF LEDIGVLGQE AKSPPNAPQE IPSKGAPAAS ERGRGNKPNQ LIQLSQNCQS  180
AVTNNNSRVS ELGNGGGKAQ MGYCMELVKN TRLAPRPNTG VNFVNFPLFS RPHAVKINDR  240
ARVEEKAAAA PVNRNLVESS SGVKSVAGIK ALPRKLELEK PDAPGRQHVK VPSERIEANR  300
ERGEDHETEK DDKNAAAIKD CSFAKPETEK DPVAVVASSS VCSVNSAGIE SYEPKNNREK  360
RKVSEREESS GEQSDDLEDE SVGTKKPANG RGTGAKRSRA AEVHNLSERR RRDRINEKMR  420
ALQELIPNCN KTDKASMLEE AIEYLKTLQL QLQMMSMRNG MYMPTPMMLP PGMQHINGPA  480
MAHFSPMGVG MGMGMGMGMG MGYGMHVNGS PGCSLIPVQP MHGQQFPCPA IAGQAALHRM  540
MLGPANPPVF GAIAPHQLSS PPCHVVKGNT APDVTMPAAA PAPPTSDPAA APVSRDQKEE  600
GKNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407412ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101598.10.0transcription factor PIF3-like
RefseqXP_020101599.10.0transcription factor PIF3-like
TrEMBLA0A199UI260.0A0A199UI26_ANACO; Transcription factor PIF3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-40phytochrome interacting factor 3