PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 597aa    MW: 63185.2 Da    PI: 9.374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012999.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05107129123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k F r  nL+ H r H
  Aco012999.1 107 FVCEVCNKGFQREQNLQLHRRGH 129
                  89*******************88 PP

2zf-C2H212.50.00046183205123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Aco012999.1 183 WKCDKCSKRYAVQSDWKAHSKTC 205
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-6106129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.08E-7106129No hitNo description
SMARTSM003550.0041107129IPR015880Zinc finger, C2H2-like
PfamPF121713.9E-5107129IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SMARTSM00355300148178IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4171204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.08E-7178203No hitNo description
SMARTSM00355140183203IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAAAASFFGI REDPDPRNQM QQPPPPPPPL QQHQPQLPPS SQSVLGSTAT AAAAAAAAGS  60
SQPVAPQKKK RNQPGNPSKY PHSMSIAYPD AEVIALSPKT LMATNRFVCE VCNKGFQREQ  120
NLQLHRRGHN LPWKLKQKNP KEVRRRVYLC PEPTCVHHDP SRALGDLTGI KKHYCRKHGE  180
KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQETAR  240
IPPGLNPIGS HLYGNSNMSL GLSQMSSQMS SLQDLLSSSA FRPPPPPPHP HSSSPFFLGG  300
GGGGASQEFH NEDPQPQQHS LLQSKPFHSL MQLPDLQGNA NNSSSNSGAV AAANMFNLGF  360
FSNSSNAIPM NNSVPDQFNG GGNNNGSNHS ESGSLFPGNL IAGDHHIGTG ISQMYNNSMR  420
GESVLPQMSA TALLQKAAQM GATTSGGGGG GSSLLRGFGS TYSNSGANKP GVFRSSSFGE  480
SSRAQVEHEN HFQDLMNSLA NASSNMFGGS GGGGGGVAAA FGGNYMSSGQ EQETGLGGFD  540
RLTRDFLGVG GSMVRGMGGG ISQREQHHGL DMGSLDSEMK SGGAASSRSF GSGNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35179241365Zinc finger protein JACKDAW
5b3h_F9e-35179241365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743080.0AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020115255.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_020115256.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-123IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A199VEY60.0A0A199VEY6_ANACO; Protein indeterminate-domain 5, chloroplastic
STRINGXP_008812809.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-110indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]