PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012897.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 146aa    MW: 16556.6 Da    PI: 6.6231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012897.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-055476123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Aco012897.1 54 YTCSFCRREFRSAQALGGHMNVH 76
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.93E-75181No hitNo description
Gene3DG3DSA:3.30.160.608.9E-45278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00615476IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-65477IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2195481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAPAELNLLS TTQPHKLPRH DNAVEQDADA DDSWEVKAFM QDRMAAATWP PRSYTCSFCR  60
REFRSAQALG GHMNVHRRDR ARLRHQCHIN PSPPQPLPLH PRVFSDVRRL RCPDLTELVR  120
GEVGAEDDGG VKEGEEIDLE LRLGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-144976229superman protein
2l1o_A4e-144976229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084982.11e-104transcriptional regulator TAC1-like
TrEMBLA0A067JUG61e-27A0A067JUG6_JATCU; Uncharacterized protein
STRINGGorai.004G185800.15e-28(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-29C2H2 family protein