PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 197aa    MW: 21649.8 Da    PI: 7.9453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012738.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000761841223
                 EETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                 kC  C + ++  ++L+ H+r+  H
  Aco012738.1 18 KCAACFRQYNKMEHLVEHMRVsfH 41
                 6999****************8666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.7621746IPR007087Zinc finger, C2H2
PROSITE patternPS0002801941IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLHTNCKASA STIECLNKCA ACFRQYNKME HLVEHMRVSF HSSHEPKCGV CQKHCRSFES  60
LREHLIGPLP KVDCARIFGI RGCNLCLNIF DSSSALRAHR TACQYSRTSV NSGFISRMSR  120
MSLQSSTDNY GRTQGLQVVA LACKMVGGGS DGSLDLCARV CLVGEDESII NLNGADYQFE  180
VPIIQIDLIG QGFQSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089248.11e-110uncharacterized protein LOC109710870
TrEMBLA0A199UY348e-95A0A199UY34_ANACO; RNA exonuclease 4
STRINGGSMUA_Achr2P14440_0011e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP214655