PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012243.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 150aa    MW: 16316.4 Da    PI: 10.074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012243.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-182372356
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 ++GVr +k +g Wv+eIr+p+    +  r++lg+f+ +e+Aa+a++aa  +l+g+
  Aco012243.1 23 FRGVRMRK-WGTWVSEIRVPR----SqSRIWLGSFDHPEKAARAYDAAVYCLRGA 72
                 8*****99.**********84....35*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-272279IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-192279IPR016177DNA-binding domain
SMARTSM003805.3E-282285IPR001471AP2/ERF domain
PROSITE profilePS5103220.4952279IPR001471AP2/ERF domain
PfamPF008477.3E-102371IPR001471AP2/ERF domain
CDDcd000181.39E-232379No hitNo description
PRINTSPR003673.3E-82334IPR001471AP2/ERF domain
PRINTSPR003673.3E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MTPTPTGAAA GASSCRQHRR RLFRGVRMRK WGTWVSEIRV PRSQSRIWLG SFDHPEKAAR  60
AYDAAVYCLR GAAGNFNFPG EPQPDITEEK RRTLTPDDIK AIAACHAASA SVVIKDGDDV  120
GFSDERKLQQ LIPTSASSSL VRDACSSIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1523811574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083384.12e-78ethylene-responsive transcription factor ERF018
SwissprotQ6NLD57e-32ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A199UWR32e-71A0A199UWR3_ANACO; Ethylene-responsive transcription factor ERF018
STRINGERN125869e-35(Amborella trichopoda)
STRINGGLYMA04G06095.11e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-31ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]