PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012136.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 141aa    MW: 15053.7 Da    PI: 6.2675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012136.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-053456123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C++ F ++  L  H++ H
  Aco012136.1 34 FSCNYCTRKFYSSQALGGHQNAH 56
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-63362No hitNo description
PROSITE profilePS5015711.0323461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLASMDMEPE PEEEDLNLDL SLQPSSPPEP AGVFSCNYCT RKFYSSQALG GHQNAHKLER  60
SITKRRRESA AAAAAAVRPH AGASSGAVGG NSRDAQVESA RVASTERQKG EKSYNVGRFE  120
TGMKKSNEEL AGEIDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083478.14e-99zinc finger protein 2-like
TrEMBLA0A199VT343e-89A0A199VT34_ANACO; Zinc finger protein 2
STRINGXP_008789729.11e-33(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-17zinc finger protein 2