PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011985.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 280aa    MW: 29909.1 Da    PI: 7.1601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011985.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12109151754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++YIk+L
  Aco011985.1 109 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYIKEL 151
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16106164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10109151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15109163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-5109151No hitNo description
CDDcd048735.00E-4205233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
LNCFGGPQFA PEPNFDCLSE VCSPFAAAGL CGSSAPPAAA AAAAAAAHAA IHEEMSCGGA  60
SGGGRNICKA EQKQSAGTPE PLMLAASSCL ERKNARPKKA DGLPSKNLMA ERRRRKRLND  120
RLSMLRSVVP KISKMDRTSI LGDTIDYIKE LMARIKALQE EAEAESDPRN RPNQLGALKD  180
QLNPSETTLM RSSTKFDVER REGDTRVEVC CAAKPGLLLS MVSTLDALGL EIHQCVASCF  240
SDFGMQASCL EDKEQTELIS SEEIKQALFR NAGYGGRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092114.10.0transcription factor bHLH61-like
SwissprotQ9LSL14e-71BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A199UPK90.0A0A199UPK9_ANACO; Transcription factor bHLH93
STRINGXP_008806159.14e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-72beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]