PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011417.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 777aa    MW: 82883.7 Da    PI: 6.6885
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011417.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.7e-11307363155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +++Aa+a++ a++k++g
  Aco011417.1 307 SIYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 363
                  57*******************433.44554535555.7799999*************98 PP

2AP246.59.1e-15406457155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Aco011417.1 406 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 457
                  57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.20E-18307373No hitNo description
SuperFamilySSF541711.96E-14307373IPR016177DNA-binding domain
PfamPF008471.7E-8307363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11308372IPR001471AP2/ERF domain
SMARTSM003801.2E-22308377IPR001471AP2/ERF domain
PROSITE profilePS5103217.174308371IPR001471AP2/ERF domain
PRINTSPR003674.5E-6309320IPR001471AP2/ERF domain
PfamPF008471.1E-9406457IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17406467IPR016177DNA-binding domain
CDDcd000184.72E-24406467No hitNo description
PROSITE profilePS5103219.045407465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-18407466IPR001471AP2/ERF domain
SMARTSM003801.5E-33407471IPR001471AP2/ERF domain
PRINTSPR003674.5E-6447467IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MASMNNWLAF SLTPQDQLNP TSQPTHPTDS PPAAVARFIT GDDVPSDCYG LSADTASEPP  60
LAIPTLIRPD ASYGILEDFN RNNHQPQDWN MKGLDFKGGS SELSMLVGSS SIKNSNNMAD  120
GDVPKLEDFL GGNSFADHDH QKISSGLPGN YDSSSGAYLF SNSFLQVTDT AMVTTSNGGL  180
MSGTNGGTNT STIGLSMIKT WLRNHPAPSQ QPENNKGNID VGDCGGGATV GNINGGSANS  240
QSLSLSMSMG SQSSSALPLV TVGASGGGES SSSEGKQKAS GGGLDAQTGA IETAPRKSID  300
TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RKEGQSRKGR QGGYDKEDKA ARAYDLAALK  360
YWGPTTTTNF PVSNYEKELE EMKHMTRQEY VASLRRKSSG FSRGASIYRG VTRHHQHGRW  420
QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKSILEGSTL  480
PIGAAAKRLK EQQASENGGE ASVNGRMRTA AEVDDHRHQL MTDAFSAYTS QQQQQHHHHH  540
GGWPTIAFQQ PQPLGFHGHY PYGQARVWCK QEQDAAAAHS LQDFHQLHLS STTTHNFLQP  600
AAAAAAALHN LISLDSSSLE HSTGSNSIIY NNNGNVSASS GSYHGVVGDG HGGGFMVPIS  660
TVVADHQSHH ATAANQGSCT ISSFGDVDEG KHMLYHENMF GNDPDPYAAS RNSFYLSQNS  720
LLAVGNNNWM SSTAAAAAAS TQAVASTQAV ASRANNNNMA VCNNGGAPLF TVWNDA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093563.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN21e-132BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A199VA400.0A0A199VA40_ANACO; AP2-like ethylene-responsive transcription factor PLT2 (Fragment)
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-123AP2 family protein