PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 399aa    MW: 44290.6 Da    PI: 9.7812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011192.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.5e-07175198123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++CpdCg+ F  +++L++H++  H
  Aco011192.1 175 FSCPDCGEIFVKSDSLEVHQSIrH 198
                  89******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.45175203IPR007087Zinc finger, C2H2
PROSITE patternPS000280177198IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-22200397No hitNo description
Gene3DG3DSA:3.90.228.102.7E-11202397IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAETRRAREP MKRIKETQKL NHQEPESPSY REALRNLFTC RSRHRAAAAA AAAAEAKNKK  60
NGRRIGCSGS LCNLKDDSRI MQKPERDASP EPVKRRASVS SCNVNERSTK KPLGEANRVV  120
STSSSSHSSA SSTSSIGGSF RGMHLRRLSG CYECHMVIDP INGLLRDSSL RATIFSCPDC  180
GEIFVKSDSL EVHQSIRHAV SELGTEDTSR NIVEIIFQSS WLKKQAPICK IDRILKVHNT  240
QKTKTKFEDY RECIKNKASK LSKKYPRCIA DGNELLRFHC TTIKCSLGLH GSTNLCDSIP  300
QCSVCSIIRD GFKTDKNGRI VTMATSGRAH DNAKISLDDE RRAMLLCRVI AGRVKRNQDS  360
VEEYDSVAGT AGVYSNLDEL FVFNPKAILP CFVVIYRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6671331e-128KM667133.1 Ananas bracteatus clone 52537b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093808.10.0uncharacterized protein LOC109713920
TrEMBLA0A199VTW60.0A0A199VTW6_ANACO; Uncharacterized protein
STRINGGSMUA_Achr5P01120_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-99C2H2-like zinc finger protein