PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010971.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 177aa    MW: 18533.2 Da    PI: 8.5178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010971.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+++F++   L  H  +H
  Aco010971.1 46 FECKTCNRRFPSFQALGGHRASH 68
                 89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-944111No hitNo description
PfamPF139122.4E-134570IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3854673IPR007087Zinc finger, C2H2
SMARTSM003550.134668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139121.7E-989113IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91289111IPR007087Zinc finger, C2H2
SMARTSM003550.589111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKRSFGFVGE GEGEGEGESI GTMAGVLMLI SRSSGGRGHV CVDRVFECKT CNRRFPSFQA  60
LGGHRASHKK PRPGPAAAVD GDGAKPKMHE CSICGLEFAI GQALGGHMRR HRPVAAATAA  120
SAVAPAEFGF PRGALSEKKK RELWFDLNVS PPEAAEDAAV LGFTFELLDK GPIVVG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087452.11e-124zinc finger protein ZAT12-like
RefseqXP_020101761.11e-124zinc finger protein ZAT12-like
SwissprotQ681X46e-27ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A199V4X21e-123A0A199V4X2_ANACO; Zinc finger protein ZAT5
STRINGXP_008807730.18e-45(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-26C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]