PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010845.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 601aa    MW: 65085.3 Da    PI: 6.5208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010845.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13444490455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aco010845.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 490
                  799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-5063251IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-19443508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.20E-15443494No hitNo description
Gene3DG3DSA:4.10.280.101.4E-18444503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10444490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MKTEMDDDAG AGAGDCGGGF WSAEDAAMGA AVLGPEAFDY LAAAHAAASA EGLITAASGD  60
ADLQNKLVDL VEGPADRPGL GWSSAIFWQI SRAKTGDLVL VWGDGYCREP EPGESAPQSA  120
RNPNPESHQK LRKRVLQKLH EAFGGSDEDY YALRLDHVTD AEMFFLASMY FSFPCGKGAP  180
GRAFASQKHL WIPDSELKIS PPNYCFRGFL ACSAGFKTIV IVPFETGVLE LGSVRSIAES  240
SDALQMIKAV FLGTVKVPVV VEKKKNEGNG FVGNYGPGER VQGSAKIFGK DLNLGRPASN  300
VGISVSNQPN SKNSSEQHML FPNVRKGLQG FNWNHARNLN PPQQFGNGIV VASNEVNHHA  360
NGIGDSPVLN QFQLQKQSRQ IDFSTGATSA AGGNLVARVQ GPLEGENADI DALCKEERGS  420
GAIEERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAIAYITELQ KKLKEMESEK EQMLDSNMTD PREGVNHHQP QVDVQEIQDE LIVRVSSPIE  540
THPVGKVFRA FEEAQVNVAD SKVAAANGKL VHTIVIKSAG FEQQMKEKLI SALSRVMSST  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A3e-216324748227Transcription factor MYC3
4ywc_A3e-216324748227Transcription factor MYC3
4ywc_B3e-216324748227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425433RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409474.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
TrEMBLJ3KY240.0J3KY24_ORYBR; Uncharacterized protein
TrEMBLK3XPY30.0K3XPY3_SETIT; Uncharacterized protein
TrEMBLA0A0E0JG400.0A0A0E0JG40_ORYPU; Uncharacterized protein
STRINGOB01G18800.10.0(Oryza brachyantha)
STRINGSi003963m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-111ABA-inducible BHLH-type transcription factor