PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 380aa    MW: 43843.8 Da    PI: 8.6026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-0679100223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ Cg sF  + +Lk+H+++H
  Aco010320.1  79 SCEECGASFQKPAHLKQHMQSH 100
                  6*******************99 PP

2zf-C2H219.62.5e-06106130123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp  dC +s++rk++L+rH+ tH
  Aco010320.1 106 FSCPveDCRQSYRRKDHLTRHLHTH 130
                  89********************999 PP

3zf-C2H213.20.00027135160123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  + C+   C+++F+ k n++rH +  H
  Aco010320.1 135 FACTieGCDRRFNIKANMQRHVKErH 160
                  679999****************9988 PP

4zf-C2H221.94.4e-07172194123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ Cgk+F+  s L++H  +H
  Aco010320.1 172 YACKECGKTFKYASKLRKHEDSH 194
                  89*****************9888 PP

5zf-C2H217.89.1e-06261285223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  +C+  dC+ sFs++snL++Hi+  H
  Aco010320.1 261 QCSfkDCHLSFSNRSNLNKHIKAcH 285
                  69999*****************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355183153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.92178105IPR007087Zinc finger, C2H2
SMARTSM003550.008878100IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-58096IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-1090132No hitNo description
Gene3DG3DSA:3.30.160.601.1E-1397132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012106130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741106135IPR007087Zinc finger, C2H2
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-7133194No hitNo description
Gene3DG3DSA:3.30.160.602.7E-8133161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803135165IPR007087Zinc finger, C2H2
SMARTSM003550.0012135160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-7169194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.445172194IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM003553202227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
SMARTSM0035524230251IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.83E-7241297No hitNo description
Gene3DG3DSA:3.30.160.602.9E-6241282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.344260290IPR007087Zinc finger, C2H2
SMARTSM003550.0058260285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262285IPR007087Zinc finger, C2H2
SMARTSM003552.7291317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MACLESDASE GEVESEGCAK KQPFFRDIRR YSCEFCGIIR SKKSLIRSHI LAHHKDEYKG  60
SQICEDSEEN MARKDVSRSC EECGASFQKP AHLKQHMQSH SLERPFSCPV EDCRQSYRRK  120
DHLTRHLHTH EGKLFACTIE GCDRRFNIKA NMQRHVKERH EDGSPCENKK QYACKECGKT  180
FKYASKLRKH EDSHVKLDCV EVVCCEPGCF KTFTNAECLK AHVQFCHQHT QCEICGTKQM  240
KRNIKRHKRK HEGVIVAERV QCSFKDCHLS FSNRSNLNKH IKACHEQLKP FVCRLSGCGQ  300
KFPYRHVRDN HEKSGSHVYL QGDFLEVDEQ SQSRCKGGRK RKTLSVETLT RKRVAPPGEA  360
SCLDDGTEYM RWLLSGDTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-177925323186Aart
2i13_B2e-177925323186Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079780.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ41e-118TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A199UVM70.0A0A199UVM7_ANACO; Transcription factor IIIA
STRINGXP_008793643.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-120transcription factor IIIA