PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 395aa    MW: 43042.6 Da    PI: 8.2552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-07225247123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Aco010230.1 225 HYCQVCGKGFKRDANLRMHMRAH 247
                  68*******************99 PP

2zf-C2H2120.00065319342123
                  EEETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                  y+C+ C+ k Fs  s+L++H + +
  Aco010230.1 319 YVCNRCNgKQFSVLSDLRTHEKHC 342
                  9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.95E-6223268No hitNo description
PROSITE profilePS5015712.653225252IPR007087Zinc finger, C2H2
SMARTSM003550.0034225247IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6225252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
SMARTSM00355140281314IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-4317340IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035518319341IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MIPGATAPYF QHNHQNFQMF DGIDELLPPS TGGHVDGQAQ NLMYNLSVLK DKIQQLQTLV  60
GFLVAPSPAR PEPAAVAVSG AEVVIQEIIG AASSMMYAFQ QAELGSLGTS RGAIREEEMS  120
PHNNHVKSAY DGSSQATSEV IDHVLHNIDA SGARKGLYTN VHEANYNCNN SIMSPATKAP  180
HQRVNGSSST KNSDKGNSTE HEQAGSLSCD IIELDAADLL AKYTHYCQVC GKGFKRDANL  240
RMHMRAHGDE YKTNSALTKP PKGGNCGKGA AADCAAAARR YSCPHEGCRW NWKHAKFRPL  300
KSIICAKNHY KRSHCPKMYV CNRCNGKQFS VLSDLRTHEK HCGDTKWLCS CGTTFSRKDK  360
LMGHVALFVG HAPVVGCFGK QLEKGEEKDF MEST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020115169.10.0zinc finger protein STOP1 homolog
TrEMBLA0A199UR140.0A0A199UR14_ANACO; Zinc finger protein STOP
STRINGXP_008787557.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein