PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009685.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 372aa    MW: 41943.9 Da    PI: 4.5085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009685.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.1e-34471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+++++++sw++ gnsfvv+d++ fa ++Lp+yFkh nf+SFvRQLn+YgF+kv++++         weF+++ F +g+k+ll+ ik
   Aco009685.1  47 FLTKTFDVVDDPATNRVVSWNRAGNSFVVWDPHAFAVSLLPRYFKHGNFSSFVRQLNTYGFRKVDTDR---------WEFANEGFLRGQKHLLRIIK 134
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Aco009685.1 135 RRKP 138
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5743136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-3443136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.1E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDSPPCVVVK EEFPGEEGSA PPPEGVRPHP GPPRPMEGLH DVGPPPFLTK TFDVVDDPAT  60
NRVVSWNRAG NSFVVWDPHA FAVSLLPRYF KHGNFSSFVR QLNTYGFRKV DTDRWEFANE  120
GFLRGQKHLL RIIKRRKPPS CPPSRQQPPS PCLEVGQFGL EGEIDRLKRD KNILLAEVVK  180
LRQVQQATRA NIEAMEDRIQ GTEKKQQQMM AFLAHAMQNP DFFQMLVQQQ DKRKEIEEAI  240
SKKRRRPIDK APFYDEGEAS PVEGSEAPFP FEFGEIPELD SLALEMLGSE NSVAEEIEGE  300
HKEGGDADSN DGFWEELLNE GIWKMERNSD LEGGDDDEDV DVLVQELGFL NSNSLKTAET  360
MRDGGRDWGD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-244513627129Heat shock factor protein 1
5d5v_B8e-244513627129Heat shock factor protein 1
5d5v_D8e-244513627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RIIKRR
2231245KRKEIEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087483.10.0heat stress transcription factor A-2c isoform X1
RefseqXP_020087489.10.0heat stress transcription factor A-2c isoform X1
SwissprotQ338B01e-136HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A199VER30.0A0A199VER3_ANACO; Heat stress transcription factor A-2c
STRINGXP_008813517.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]