PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 282aa    MW: 30478.4 Da    PI: 8.6167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-0685104221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +Cp Cg++F++   L+ H+r
  Aco009190.1  85 QCPVCGRTFKSAKALHGHMR 104
                  8******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.87E-675107No hitNo description
Gene3DG3DSA:3.30.160.607.2E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.51284111IPR007087Zinc finger, C2H2
SMARTSM003552.2E-484106IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-785108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139128.2E-9152177IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556153180IPR007087Zinc finger, C2H2
SMARTSM003551.7153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSAPHPPLLP HHPSTFSAVG GDGDGGDDPA KNRPRKSSHE ADAAAAVGNE DDENEEGEEA  60
APPKQQQQQQ QQQRRRRRIP EGPLQCPVCG RTFKSAKALH GHMRCHPERN WRGVTPPTTA  120
TTVRLGEKEA AADSLMLLSA QPQDQAEEEG GRFRCASCGA RFGTRQALGG HRASHRSKIG  180
CYMKGKEGVS SGVSVTEKRD DNNNNNNSKV VGVVGERRRR RGYKKRGSGT GIDQGPSSSS  240
TTAAADERVE EGPRRRQWVV DLNLPPPPED DNKDEQSPPP P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112613.10.0zinc finger protein ZAT3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-23C2H2-like zinc finger protein