PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008972.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 256aa    MW: 28098.6 Da    PI: 5.4163
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008972.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35181082101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sw eng++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkkv +++         weF+++sF++g+++ll++i+
   Aco008972.1  18 FLMKTYELVDDPAVDDVVSWGENGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANESFRRGERRLLSEIH 105
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
   Aco008972.1 106 RRR 108
                   *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.75E-3414107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5614107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.8E-3815107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MHPTRGSGAS ALSSSPPFLM KTYELVDDPA VDDVVSWGEN GSTFVVWRPA EFARDLLPKY  60
FKHNNFSSFV RQLNTYGFKK VVTDRWEFAN ESFRRGERRL LSEIHRRRVC PAVAVAVPMP  120
IQSPGSSGED PQVLSLSSTT SPPQPLPPPP PPPPHVDLAE ENEWLRTENA RLSRELGDMR  180
GLCSNIFRLV TTYTADEGTS SVPPPPPPAP PPPPQALELF PRRTSEEEAV SLLFGVPIGG  240
RREPSARAPG ADPEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-26610717129Heat shock factor protein 1
5d5v_B4e-26610717129Heat shock factor protein 1
5d5v_D4e-26610717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065253e-70AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096501.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C82e-70HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A199V7100.0A0A199V710_ANACO; Heat stress transcription factor B-2b
STRINGXP_008799550.12e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-59heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]