PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 307aa    MW: 32600.1 Da    PI: 6.2397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008896.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051140162123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC  C+k+F++   L  H  +H
  Aco008896.1 140 YKCRTCDKRFPSFQALGGHRASH 162
                  9***********99999998887 PP

2zf-C2H212.60.00042209231123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cg  F++   L  H+r+H
  Aco008896.1 209 HECAICGSEFNSGQALGGHMRKH 231
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-11139164IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-8139162No hitNo description
SMARTSM003550.04140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676140167IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-8204231No hitNo description
PfamPF139129.6E-11208232IPR007087Zinc finger, C2H2
SMARTSM003550.098209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369209231IPR007087Zinc finger, C2H2
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGTQEEEEEA MDCSTTNKDA NGAFDYEFAA VAVAVTKGKR TKRWRIHPPP FDYEFAAVAV  60
AVTKGKRTKR WRIHPPPPQV PTAAVEPDSS SSSDSSAAAA AADEEDEDEL DMANCLILLA  120
QGHRAERSEP DPGPTPCDTY KCRTCDKRFP SFQALGGHRA SHKKPKPSPP PAANEDVQRT  180
SVDSSSSKLA TAAAANNNNN NNNNNSRVHE CAICGSEFNS GQALGGHMRK HRPLGVVPAA  240
AGPAVPPAEE AKNKERILLS LDLNLPAPAD DDSAGGSKEL QRAPPFGLSN NPPPMIFSAS  300
LVGCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095473.10.0zinc finger protein ZAT5-like
TrEMBLA0A199UV141e-128A0A199UV14_ANACO; Zinc finger protein ZAT5
STRINGXP_008807698.12e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-22C2H2 family protein