PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco008819.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HSF
Protein Properties Length: 366aa    MW: 41311.9 Da    PI: 5.2378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco008819.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.8e-35521422101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw   +nsfvv+d++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++i+
   Aco008819.1  52 FLMKTYDMVDDPCTDQIVSWGVAKNSFVVWDPHAFATTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQRQLLKNIR 139
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Aco008819.1 140 RRK 142
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.1E-6048141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3848141IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3448141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.6E-3252141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1890102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNPYLNPVKE EYPGALAGVA VGASSSLLGS ENGLPLLPRP MQGLGDAGPP PFLMKTYDMV  60
DDPCTDQIVS WGVAKNSFVV WDPHAFATTL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW  120
EFANEGFVRG QRQLLKNIRR RKPPPPHPVP QQQPLGPYLE VGQFGYEAEI DRLKRDKQLL  180
MAELVKLRQE QQNTKALLRA MEERLQGTEQ KQQQMMVFLA RALRNPNFLQ QLATQNEKRK  240
QLEEAISKKR RRQIEQASFR GDAGSGSRVE IQTPIKLEAE TLERNILLDG VLDLETLALE  300
MQGLGKRKDK EHIDGELNDE FWEELLNGGI GEENGEVDIE GMSDSAEDVD VLAEKLGFLS  360
STSPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-264314117129Heat shock factor protein 1
5d5v_B1e-264314117129Heat shock factor protein 1
5d5v_D1e-264314117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237251KRKQLEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096365.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-148HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A199VHL91e-179A0A199VHL9_ANACO; Heat stress transcription factor A-2b (Fragment)
STRINGXP_008813499.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]