PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 406aa    MW: 46779.4 Da    PI: 8.4122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05145169123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++C+   C k Fs++s LkrH  +H
  Aco007900.1 145 HVCHyeGCEKKFSDRSKLKRHFLVH 169
                  79*******************8877 PP

2zf-C2H218.36.4e-06175199123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  +kC+   Cgk Fs + nL++H rtH
  Aco007900.1 175 FKCHyeGCGKAFSLPFNLTNHFRTH 199
                  89**********************8 PP

3zf-C2H217.89e-06205230123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  ++Cp   C+++F++ + L++Hi+t H
  Aco007900.1 205 HVCPhpECSRRFTDEYKLQSHIKTrH 230
                  79**********************99 PP

4zf-C2H215.45.3e-05263288123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  ++Cp   C k + +++ L+ H+r+ H
  Aco007900.1 263 FVCPyeGCRKAYIHRYKLNLHLRKeH 288
                  89**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-8111140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.1E-7114169No hitNo description
SMARTSM003550.0033116140IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032116145IPR007087Zinc finger, C2H2
PROSITE patternPS000280118140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-11142165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0051145169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.692145174IPR007087Zinc finger, C2H2
PROSITE patternPS000280147169IPR007087Zinc finger, C2H2
SuperFamilySSF576676.22E-14156209No hitNo description
Gene3DG3DSA:3.30.160.605.6E-17166197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.237175204IPR007087Zinc finger, C2H2
SMARTSM003550.0016175199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-8198228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0083205230IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328205230IPR007087Zinc finger, C2H2
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
SuperFamilySSF576675.04E-5259286No hitNo description
Gene3DG3DSA:3.30.160.601.9E-8261286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0091263288IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221263293IPR007087Zinc finger, C2H2
PROSITE patternPS000280265288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MQNPNPLPKT LNPKTLIPPP IPLVIGLDPS EHEAKERGAG SRRAEMKPHA KGSPSGNRPI  60
GRDRPPAARW VKEWFVSPSP SLRSHPRKDK LEALRETSKK PEVEDPKPKP TTERLYLCSY  120
VGCGKIFVDF RALDKHVQTH EERKHVCHYE GCEKKFSDRS KLKRHFLVHT GKKPFKCHYE  180
GCGKAFSLPF NLTNHFRTHC AENYHVCPHP ECSRRFTDEY KLQSHIKTRH EKYAVMHKPK  240
QTPQEKLHGI PNTPASASCD RPFVCPYEGC RKAYIHRYKL NLHLRKEHPD HDPPQNGKPS  300
PTTSNAFDRA SDQDAYVATY GAPKSFKRRE PGKEEHNKKK SGPEVVYGEG YDLKIRTVNN  360
TVEKQRQSEE RYDGDDRSEE TEEEGEMFDD LEYEEVNNEE TEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-291142284116PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328PKSFKRR
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111480.10.0uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L32e-78YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A199UJ120.0A0A199UJ12_ANACO; Putative zinc finger protein
STRINGXP_008807673.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.19e-78C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]