PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007874.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 395aa    MW: 43369.1 Da    PI: 7.4599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007874.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06167189223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ Cg++F ++++L+ H+ + H
  Aco007874.1 167 SCNECGEVFINPEDLEIHQANnH 189
                  8******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.058166194IPR007087Zinc finger, C2H2
PROSITE patternPS000280166189IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-17191392No hitNo description
Gene3DG3DSA:3.90.228.102.0E-4192309IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.2E-7328393IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGEATKSYKP NNNGEKQTHE RTHKAPSWVV LKILSPCRYC HVSEGKKEEE KKKDIEEKKD  60
NLGAKMMVKG PGTNCSNRYL KGPCDEAINN GGASTCSSFN SSSASASASA SVTSASSSSL  120
CSSFSSLGGS FRGVHMKKLS GCYECHLEAD TFNCVSKDHA KITTICSCNE CGEVFINPED  180
LEIHQANNHA VSELGPEDSS RSIVEIIFQS SWLNTQHPMC KIDRILKVNN SPKTTVKFEE  240
YRNNIKGQAI KLSEKYPRFA ADGNELLRFH CTTLACSLGL DGSTNLCHSI DRCDVCEIIR  300
YGFRFDELGR ITLSSRAREI SPISCGGEAK RAMFVCRVIA GRVKKSNCST VWECESIITS  360
PEDFDSMVGS NSEELIVFNP RAILPCFVVI YSFC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111152.10.0uncharacterized protein LOC109726128
TrEMBLA0A199UIK80.0A0A199UIK8_ANACO; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr8P30300_0011e-119(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-80C2H2-like zinc finger protein