PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006872.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 174aa    MW: 18590.8 Da    PI: 4.4002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006872.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000134466123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C++ Fs+   L  H++ H
  Aco006872.1 44 YNCTFCKRGFSTAQALGGHMNIH 66
                 89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-74271No hitNo description
PfamPF139121.2E-64469IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6354471IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MADLADKKES KGSTEDDRDS PNGDGSDDDD DDDDDTASAK GQFYNCTFCK RGFSTAQALG  60
GHMNIHRKER ARTTTTTTTM SRSNSTAAAA AYVVSESVEG SGSSTGGYYY SPSSQSVRAY  120
SAHSQRPREL CLFGSGDLSL GLGLHGGDGE EEEKKDKEKE EEVDLELRLG HEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112628.11e-104zinc finger protein GIS-like
TrEMBLA0A199VFB01e-122A0A199VFB0_ANACO; Transcriptional regulator SUPERMAN
STRINGXP_008794311.17e-25(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-11C2H2 family protein